sumstats: Function to calculate the number of haplotypes, number of...
In trevorjwilli/fscSS: Calculates Summary Statistics from fsc26 simulations for ABC
sumstats R Documentation
Function to calculate the number of haplotypes, number of segregating sites, haplotype diversity, and pi of a matrix of sequences
Description
Function to calculate the number of haplotypes, number of segregating sites, haplotype diversity, and pi of a matrix of sequences
Usage
sumstats(x, nsites = NULL)
Arguments
x
Object of class DNAbin or a matrix of multiple sequence alignment where
rows are sequences and columns are nucleotide positions
nsites
Optional integer specifying the total number of nucleotide sites in the loci examined
trevorjwilli/fscSS documentation built on Jan. 11, 2023, 7:45 a.m.
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| sumstats | R Documentation |
Function to calculate the number of haplotypes, number of segregating sites, haplotype diversity, and pi of a matrix of sequences
Description
Function to calculate the number of haplotypes, number of segregating sites, haplotype diversity, and pi of a matrix of sequences
Usage
sumstats(x, nsites = NULL)
Arguments
x |
Object of class DNAbin or a matrix of multiple sequence alignment where rows are sequences and columns are nucleotide positions |
nsites |
Optional integer specifying the total number of nucleotide sites in the loci examined |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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