biscuiteer-package: Convenience Functions for Biscuit

biscuiteer-packageR Documentation

Convenience Functions for Biscuit

Description

A test harness for bsseq loading of Biscuit output, summarization of WGBS data over defined regions and in mappable samples (with or without imputation, dropping mostly-NA rows, age estimates, etc.)

Author(s)

Timothy J Triche Jr Tim.Triche@vai.org, Wanding Zhou Wanding.Zhou@vai.org, Ben Johnson Ben.Johnson@vai.org, Jacob Morrison Jacob.Morrison@vai.org, Lyong Heo Lyong.Heo@vai.org

See Also

Useful links:

Examples


  orig_bed <- system.file("extdata", "MCF7_Cunha_chr11p15.bed.gz",
                          package="biscuiteer")
  orig_vcf <- system.file("extdata", "MCF7_Cunha_header_only.vcf.gz",
                          package="biscuiteer")
  bisc <- readBiscuit(BEDfile = orig_bed, VCFfile = orig_vcf,
                      merged = FALSE)


trichelab/biscuitEater documentation built on March 2, 2024, 6:57 p.m.