grToSeg: Dump GRanges to segmented data data.frame

In trichelab/biscuitEater: Convenience Functions for Biscuit

Dump GRanges to segmented data data.frame

Description

Output data.frame can be written to a .seg file if supplied with filename input argument

Usage

grToSeg(gr, filename = NULL, minAbs = NULL)

Arguments

gr	A GRanges or GRangesList to dump to .seg file
filename	Where to save the result - unsaved if NULL (DEFAULT: NULL)
minAbs	Minimum absolute gain/loss cutoff (DEFAULT: NULL)

Value

     A data.frame with columns:
               (ID, chrom, loc.start, loc.end, num.mark, seg.mean)

See Also

segToGr

Examples

  clock <- getClock(model="horvathshrunk", genome="hg38")
  gr <- clock$gr

  df <- grToSeg(gr = gr)

trichelab/biscuitEater documentation built on March 2, 2024, 6:57 p.m.