RPKMtoTPM: Reads per kilobase per million (RPKM) to transcripts per...
In trichelab/rehash: Lightly anonymize and deanonymize datasets for quasi-public distribution
Description
Usage
Arguments
Value
See Also
Examples
Description
Per Colin Dewey, TPM == (RPKMj / sum(RPKM)) * 1000000, for every feature j.
(The same is true of FPKM, since RPKM just estimates fragments of template.)
Usage
1
Arguments
object
a (DelayedM|m)atrix of RPKM/FPKMs, or something containing one
...
any additional user input arguments to pass to other functions
Value
1
a (DelayedM|m)atrix of TPM estimates, or an object with one.
See Also
http://bioinformatics.oxfordjournals.org/content/26/4/493.full
Examples
1
2
trichelab/rehash documentation built on Nov. 5, 2019, 10:58 a.m.
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Description Usage Arguments Value See Also Examples
Description
Per Colin Dewey, TPM == (RPKMj / sum(RPKM)) * 1000000, for every feature j. (The same is true of FPKM, since RPKM just estimates fragments of template.)
Usage
1 |
Arguments
object |
a (DelayedM|m)atrix of RPKM/FPKMs, or something containing one |
... |
any additional user input arguments to pass to other functions |
Value
1 | a (DelayedM|m)atrix of TPM estimates, or an object with one.
|
See Also
http://bioinformatics.oxfordjournals.org/content/26/4/493.full
Examples
1 2 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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