allele.match: Allele match.

In trife/gbs: Tools for Genotyping-By-Sequencing Data

Description

Compares alleles across different individuals in a hap object.

Usage

allele.match(hap, result = c("count", "percent"), graph = F)

Arguments

hap	An object of type gbs.
result	The values to be returned. Either the number of matched calls (count), percent identitiy, or both.
histgraph	Logical value to graph results.

Details

This function ignores missing data and heterozygous calls.

Value

A matrix with upper triangle equal to the percent identity of the individuals and lower triangle equal to the proportion of alleles that match between two individuals.

Author(s)

Narinder Singh, [e-mail]

Trevor Rife, [e-mail]

Examples

data(wheat)
percId = allele.match(hap$calls,graph=T)

trife/gbs documentation built on May 31, 2019, 7:53 p.m.