getHierarchy: Get taxonomy hierarchy string for a list of taxon IDs
In trvinh/taxFun: taxFun
getHierarchy R Documentation
Get taxonomy hierarchy string for a list of taxon IDs
Description
Get NCBI taxonomy IDs, ranks and names for an input taxon list.
Usage
getHierarchy(inputTaxa = NULL, currentNCBIinfo = NULL)
Arguments
inputTaxa
NCBI ID list of input taxa.
currentNCBIinfo
table/dataframe of the pre-processed NCBI taxonomy
data (/PhyloProfile/data/preProcessedTaxonomy.txt)
Value
A list of taxonomy hierarchy vector for input taxon IDs
Author(s)
Vinh Tran tran@bio.uni-frankfurt.de
Examples
inputTaxa <- c("272557", "176299")
preProcessedTaxonomy <- getPreTaxonomyFile()
taxFun:::getHierarchy(inputTaxa, preProcessedTaxonomy)
trvinh/taxFun documentation built on July 3, 2023, 8:55 p.m.
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| getHierarchy | R Documentation |
Get taxonomy hierarchy string for a list of taxon IDs
Description
Get NCBI taxonomy IDs, ranks and names for an input taxon list.
Usage
getHierarchy(inputTaxa = NULL, currentNCBIinfo = NULL)
Arguments
inputTaxa |
NCBI ID list of input taxa. |
currentNCBIinfo |
table/dataframe of the pre-processed NCBI taxonomy data (/PhyloProfile/data/preProcessedTaxonomy.txt) |
Value
A list of taxonomy hierarchy vector for input taxon IDs
Author(s)
Vinh Tran tran@bio.uni-frankfurt.de
Examples
inputTaxa <- c("272557", "176299")
preProcessedTaxonomy <- getPreTaxonomyFile()
taxFun:::getHierarchy(inputTaxa, preProcessedTaxonomy)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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