Files in tschauer/HelpersforChIPSeq
.DS_Store
.Rbuildignore
.gitignore
DESCRIPTION
HelpersforChIPSeq.Rproj
LICENSE
NAMESPACE
R/averageMats.R
R/binMeansMatrix.R
R/countReadsOverGrangesInBAM.R
R/coverageGeneBodyScaled.R
R/keepBSgenomeSequences.R
R/normalizeTPM.R
R/orderMats.R
R/plotComposite.R
R/plotHeatmap.R
R/plotLegendtoPosition.R
R/plotRanges.R
R/plotVennOverlaps.R
R/writeRangesToFasta.R
README.md
doc/ChIPseq_CompositePlot.Rmd
doc/ChIPseq_CompositePlot.html
doc/ChIPseq_GeneBody_Scaled.Rmd
doc/ChIPseq_GeneBody_Scaled.html
doc/ChIPseq_Heatmaps.Rmd
doc/ChIPseq_Heatmaps.html
doc/ChIPseq_Peak_Overlaps.Rmd
doc/ChIPseq_Peak_Overlaps.html
doc/ChIPseq_Peak_Overlaps_Tutorial.Rmd
doc/ChIPseq_Peak_Overlaps_Tutorial.html
doc/Coverage_Matrices.Rmd
doc/Coverage_Matrices.html
doc/genebody.png
doc/heatmaps.TSS.png
inst/.DS_Store
inst/extdata/.DS_Store
inst/extdata/H2AvChIP_rep1.dmelNorm.INPnorm.chr2L.bedgraph.gz
inst/extdata/H2AvChIP_rep1.dmelNorm.histone.F2.chr2L.bed
inst/extdata/H2AvChIP_rep1.dvirNorm.INPnorm.chr2L.bedgraph.gz
inst/extdata/H2AvChIP_rep2.dmelNorm.INPnorm.chr2L.bedgraph.gz
inst/extdata/H2AvChIP_rep2.dmelNorm.histone.F2.chr2L.bed
inst/extdata/H2AvChIP_rep2.dvirNorm.INPnorm.chr2L.bedgraph.gz
inst/extdata/coverage.H2AvChIP_rep1.dmelNorm.rda
inst/extdata/coverage.H2AvChIP_rep1.dvirNorm.rda
inst/extdata/coverage.H2AvChIP_rep2.dmelNorm.rda
inst/extdata/coverage.H2AvChIP_rep2.dvirNorm.rda
inst/extdata/mat.TSS.H2AvChIP_rep1.dmelNorm.rda
inst/extdata/mat.TSS.H2AvChIP_rep1.dvirNorm.rda
inst/extdata/mat.TSS.H2AvChIP_rep2.dmelNorm.rda
inst/extdata/mat.TSS.H2AvChIP_rep2.dvirNorm.rda
inst/extdata/pool.bed
inst/extdata/promoter.bed
inst/extdata/ranges_rep1.bed
inst/extdata2/.DS_Store
inst/extdata2/H3K36me3.INPnorm.chr2L.bedgraph.gz
man/averageMats.Rd
man/axisGeneBodyScaled.Rd
man/binMeansMatrix.Rd
man/countReadsOverGrangesInBAM.Rd
man/coverageGeneBodyScaled.Rd
man/keepBSgenomeSequences.Rd
man/normalizeTPM.Rd
man/orderMats.Rd
man/plotComposite.Rd
man/plotHeatmap.Rd
man/plotLegendtoPosition.Rd
man/plotRanges.Rd
man/plotVennOverlaps.Rd
man/resizeVector.Rd
man/writeRangesToFasta.Rd
