countReadsOverGrangesInBAM: countReadsOverGrangesInBAM
In tschauer/HelpersforChIPSeq:
View source: R/countReadsOverGrangesInBAM.R
Description
count the number of reads over genomic ranges in a BAM file
Usage
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countReadsOverGrangesInBAM(
my_ranges,
bam_file,
bam_type = c("SINGLE", "PAIRED"),
single_read.unique = FALSE,
frag.min = 0,
frag.max = 500,
frag.length = 150,
frag.unique = c("allPAIRED", "oneEND", "bothEND"),
subsampling = 0
)
tschauer/HelpersforChIPSeq documentation built on Nov. 15, 2021, 9:55 a.m.
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View source: R/countReadsOverGrangesInBAM.R
Description
count the number of reads over genomic ranges in a BAM file
Usage
1 2 3 4 5 6 7 8 9 10 11 | countReadsOverGrangesInBAM(
my_ranges,
bam_file,
bam_type = c("SINGLE", "PAIRED"),
single_read.unique = FALSE,
frag.min = 0,
frag.max = 500,
frag.length = 150,
frag.unique = c("allPAIRED", "oneEND", "bothEND"),
subsampling = 0
)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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