| averageMats | averageMats |
| axisGeneBodyScaled | axisGeneBodyScaled |
| binMeansMatrix | binMeansMatrix |
| countReadsOverGrangesInBAM | countReadsOverGrangesInBAM |
| coverageGeneBodyScaled | coverageGeneBodyScaled |
| keepBSgenomeSequences | keepBSgenomeSequences |
| normalizeTPM | normalizeTPM |
| orderMats | orderMats |
| plotComposite | plotComposite |
| plotHeatmap | plotHeatmap |
| plotLegendtoPosition | plotLegendtoPosition |
| plotRanges | plotRanges |
| plotVennOverlaps | plotVennOverlaps |
| resizeVector | resizeVector |
| writeRangesToFasta | writeRangesToFasta |
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