plottingMA: plottingMA

In tschauer/HelpersforDESeq2: This is a collection of helper functions for DESeq2

Description

compare log2FC and baseMean values from results table

Usage

plottingMA(
  res,
  main_title = "",
  main_title_size = 1,
  point_size = 0.25,
  point_color = rgb(0.7, 0.7, 0.7, 0.5),
  sign_point_color = rgb(0.9, 0.6, 0, 0.5),
  selection_ids = NULL,
  selection_name = "labeled",
  selection_id_type = "symbol",
  selection_point_size = 0.5,
  selection_point_color = rgb(0, 0, 0, 1),
  selection_sign_point_color = rgb(0.8, 0, 0, 1),
  selection_text_label = FALSE,
  selection_text_size = 1,
  selection_text_adj = -0.5,
  selection_shadow = FALSE,
  xlims = c(0, 6),
  ylims = c(-5, 5),
  x_axis_by = 2,
  padj_cutoff = 0.01,
  show_legend = TRUE,
  legend_pos_label = "topright",
  legend_pos_all = "bottomright"
)

tschauer/HelpersforDESeq2 documentation built on Nov. 11, 2021, 3:10 a.m.