MovingPictures: Moving pictures of the human microbiome (Qiita-550)

In twbattaglia/MicrobeDS: Microbiome Datasets

Moving pictures of the human microbiome (Qiita-550)

Description

Understanding the normal temporal variation in the human microbiome is critical to developing treatments for putative microbiome-related afflictions such as obesity, Crohn's disease, inflammatory bowel disease and malnutrition. Sequencing and computational technologies, however, have been a limiting factor in performing dense time series analysis of the human microbiome. Here, we present the largest human microbiota time series analysis to date, covering two individuals at four body sites over 396 timepoints.

Usage

data('MovingPictures')

Format

An object of class "phyloseq".

Details

Closed-reference OTU-picking with SortMeRNA (97 percent identity)

Source

https://qiita.ucsd.edu/study/description/550

References

Caporaso et al. (2009) Genome Biol. 2011;12(5):R50. (PubMed)

twbattaglia/MicrobeDS documentation built on April 10, 2024, 11:28 p.m.