TCGA: The Cancer Genome Atlas (TCGA)
In twbattaglia/MicrobeDS: Microbiome Datasets
TCGA R Documentation
The Cancer Genome Atlas (TCGA)
Description
The Cancer Genome Atlas (TCGA) of 33 types of cancer from treatment-naive patients (a total of 18,116 samples) for microbial reads
Usage
data('TCGA')
Format
An object of class "phyloseq".
Details
WGS unampped reads with Kraken2 profiling from primary tumors
Source
ftp://ftp.microbio.me/pub/cancer_microbiome_analysis
References
Poore et al. (2020) Nature Mar;579(7800):567-574
(PubMed)
twbattaglia/MicrobeDS documentation built on April 10, 2024, 11:28 p.m.
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| TCGA | R Documentation |
The Cancer Genome Atlas (TCGA)
Description
The Cancer Genome Atlas (TCGA) of 33 types of cancer from treatment-naive patients (a total of 18,116 samples) for microbial reads
Usage
data('TCGA')
Format
An object of class "phyloseq".
Details
WGS unampped reads with Kraken2 profiling from primary tumors
Source
ftp://ftp.microbio.me/pub/cancer_microbiome_analysis
References
Poore et al. (2020) Nature Mar;579(7800):567-574 (PubMed)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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