data/README.md

In twesleyb/SwipProteomics: Analysis of Swip TMT Spatial Proteomics

SwipProteomics/data

BioID data and results

• BioID.zip
• wash_interactome.rda

TMT Pre-processed data

• pd_psm.rda - raw PSM data reformatted for MSstatsTMT, input to PDtoMSstatsTMTFormat
• pd_annotation.rda - annotations for PDtoMSstatsTMTFormat, input to PDtoMSstatsTMTFormat
• msstats_prot.rda - normalized protein-level data
• msstats_contrasts.rda - a contrast matrix in the format MSstatsTMT expects
• gene_map.rda - gene uniprot, entrez, and symbol identifiers

MSstatsTMT results

• msstats_results.rda - the statistical results for intrafraction comparisons

Partition of the Protein co-variation graph

• leidenalg_partition.rda

Misc

• norm_prot.rda
• sig_modules.rda
• swip.rda
• module_colors.rda

twesleyb/SwipProteomics documentation built on Sept. 15, 2021, 7:38 a.m.