download.mutation.images: download.mutation.images

In uazadi/TIDaC: TIDaC (TCGA Image Dataset Creator)

Description

Download and save the TCGA images related to one specified mutation type and mutation consequence type occured on a gene. These image will be saved in a folder named "<gene_name>_<mutation type>_<mutation consequence type>, which will be placed in <dataset.path>, if it is specified, or in the current directory otherwise.

Usage

download.mutation.images(gene.symbol, mutation.type,
  mutation.cons_type = "", dataset.path = "")

Arguments

gene.symbol	the Gene Symbol of a TCGA Gene
mutation.type	a TCGA mutation Type
mutation.cons_type	a TCGA mutation Consequence Type (optional)
dataset.path	the root folder of the dataset (optional)

Examples

download.mutation.images("AKAP2", "Single base substitution", "intron_variant")

uazadi/TIDaC documentation built on Sept. 22, 2020, 1:59 a.m.