get.list_cases: get.list_cases

In uazadi/TIDaC: TIDaC (TCGA Image Dataset Creator)

Description

Return the list of the TCGA case.ids which have the mutation of TCGA Type <mutation_type> on the gene with Gene Ensembl equal to <gene.ensembl> that couse the TCGA Consequence Type <mutation.cons_type>

Usage

get.list_cases(gene.ensembl, mutation.type, mutation.cons_type = "")

Arguments

gene.ensembl	a Gene Symbol of a gene that occur in TCGA
mutation.type	a TCGA mutation Type (related to the mutations)
mutation.cons_type	a TCGA Consequence Type (related to the mutations)

Value

the list of the case.ids which have the mutation of <mutation.type> on the gene <gene.ensembl>

Examples

get.list_cases("ENSG00000152217", "Single base substitution", "missense_variant")

uazadi/TIDaC documentation built on Sept. 22, 2020, 1:59 a.m.