Man pages for ucl-cssb/flopr
A package for the normalisation and calibration of flow cytometry and plate reader spectrophotometry data
| biotek_parse | Parser for Biotek Neo 2 plate reader data |
| calibrate_flu | Convert arbitrary fluorescence units to calibrated units |
| calibrate_od | Convert arbitrary absorbance units to calibrated units |
| cytation_parse | Parser for Biotek Cytation plate reader data |
| ff_append_cols | Append data columns to a flowFrame |
| flu_norm | Normalise fluorescence against negative well |
| generate_cfs | Generate Conversion Factors |
| get_bacteria | Remove background debris events |
| get_calibration | Get fluorescence calibration curve parameters |
| get_singlets | Remove doublet events |
| infinite_parse | Parser for Tecan Infinite plate reader data |
| next_blank | Find next blank line |
| next_blank_cell | Find next blank line |
| next_blank_row | Find next blank line |
| next_filled | Find next non-blank line |
| next_filled_cell | Find next non-blank line |
| next_filled_row | Find next non-blank line |
| od_norm | Normalisation absorbance against blank well |
| plot_trimming | Plot trimming process |
| prep_flow_frame | Log10 transform and remove -Inf values from 'flowFrame' |
| process_fcs | Process an .fcs files to remove debris and doublets |
| process_fcs_dir | Process .fcs files within a directory to remove debris and... |
| process_plate | Plate reader normalisation and calibration |
| spark_parse | Parser for Tecan Spark plate reader data |
| sparkParse | Parser for Tecan Spark plate reader data |
| summarise_data | Get geometric mean and standard deviation of fluorescence... |
| to_mef | Calibrate fluorescence measurements |
