mindensityClust: A function to cluster flow cytometry data by one fluorescence...

In ucl-cssb/fluoroClust: Cluster flow cytometry data in 1 dimension

Description

Cluster data in a flowFrame using the flowClust package. Given a fluorescence channel and, optionally, prior values for the on and off peak locations, determines how many clusters there are and produces information on the populations.

Usage

mindensityClust(fF, channel, threshold, do.plot)

Arguments

fF	a flowFrame to cluster.
channel	the fluorescence channel on which to cluster.
do.plot	a Boolean flag to determine whether to produce plots showing the trimming of each flowFrame. Defaults to FALSE.

Value

a data.frame containing num_samples, the number of samples clustered, max_clust_mean, the mean value of fluoresence in the "on" cluster, and max_clust_prop, the proportion of the total population that is "on".

ucl-cssb/fluoroClust documentation built on May 3, 2019, 2:22 p.m.