Files in ucl-pathgenomics/cmvdrg
Human CMV Drug Resistance Genotyping
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/add_resistance_info.R
R/annotate_variants.R
R/call_resistance.R
R/cmvdrg_data.R
R/handle_fasta.R
R/make_clin_table.R
R/plot_lollipop.R
R/read_input.R
R/read_varscan_data.R
R/runShinyCMV.R
README.Rmd
README.md
inst/CITATION
inst/db/cmvdrg-db1.csv
inst/db/cmvdrg-db1.xlsx
inst/ref/DB-CMV.yml
inst/ref/NC_006273.2.fasta
inst/ref/NC_006273.2.fasta.fai
inst/ref/NC_006273.2.gff3
inst/ref/NC_006273.2e.sqlite
inst/shiny-app/server.R
inst/shiny-app/ui.R
inst/shiny-app/www/1.png
inst/shiny-app/www/2.png
inst/shiny-app/www/3.png
inst/shiny-app/www/4.png
inst/shiny-app/www/923-pgu-logo.jpg
inst/shiny-app/www/mrc.png
inst/shiny-app/www/ucl.png
inst/shiny-app/www/wt.jpg
inst/testdata/A10.fasta
inst/testdata/A10.tab
inst/testdata/A10.vcf
inst/testdata/A10_fragment.fasta
inst/testdata/snpsites.vcf
man/add_resistance_info.Rd
man/annotate_variants.Rd
man/call_resistance.Rd
man/cmvdrg_data.Rd
man/handle_fasta.Rd
man/make_clin_table.Rd
man/plot_lollipop.Rd
man/read_input.Rd
man/read_varscan_data.Rd
man/runShinyCMV.Rd
tests/testthat.R
tests/testthat/test_data.R
tests/testthat/test_vis.R
vignettes/.gitignore
vignettes/cmvdrg-intro.Rmd
