plot_lollipop: Make gene lollipop plot

Description Usage Arguments Value

View source: R/plot_lollipop.R

Description

Produces figures for the web application. Explores spatial location of mutations in resistance genes.

Usage

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plot_lollipop(
  f.dat,
  f.gene = "UL54",
  resistance_table = system.file("db", "cmvdrg-db1.csv", package = "cmvdrg")
)

Arguments

f.dat

resistance data frame from cmvdrg, where all_muts == F

f.gene

Which gene to plot

resistance_table

location of the csv resistance database

Value

intermediate data.frame with genome level annotation


ucl-pathgenomics/cmvdrg documentation built on Dec. 8, 2020, 2:36 a.m.