plot_lollipop: Make gene lollipop plot
In ucl-pathgenomics/cmvdrg: Human CMV Drug Resistance Genotyping
Description
Usage
Arguments
Value
View source: R/plot_lollipop.R
Description
Produces figures for the web application.
Explores spatial location of mutations in resistance genes.
Usage
1
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5
plot_lollipop(
f.dat,
f.gene = "UL54",
resistance_table = system.file("db", "cmvdrg-db1.csv", package = "cmvdrg")
)
Arguments
f.dat
resistance data frame from cmvdrg, where all_muts == F
f.gene
Which gene to plot
resistance_table
location of the csv resistance database
Value
intermediate data.frame with genome level annotation
ucl-pathgenomics/cmvdrg documentation built on Dec. 8, 2020, 2:36 a.m.
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Description Usage Arguments Value
View source: R/plot_lollipop.R
Description
Produces figures for the web application. Explores spatial location of mutations in resistance genes.
Usage
1 2 3 4 5 | plot_lollipop(
f.dat,
f.gene = "UL54",
resistance_table = system.file("db", "cmvdrg-db1.csv", package = "cmvdrg")
)
|
Arguments
f.dat |
resistance data frame from cmvdrg, where all_muts == F |
f.gene |
Which gene to plot |
resistance_table |
location of the csv resistance database |
Value
intermediate data.frame with genome level annotation
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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