read_input: Handles input file

Description Usage Arguments Value

View source: R/read_input.R

Description

This function handles vcf, varscan2 tab variant & fasta file formats onto handle_fasta(). Returns an intermediate data.frame, which contains variant information to be annotated by annotate_variants().

Usage

1
read_input(infile, global)

Arguments

infile

Path to the input file

global

Package object for consistent runtime variables

Value

An intermediate data.frame


ucl-pathgenomics/cmvdrg documentation built on Dec. 8, 2020, 2:36 a.m.