API for uclahs-cds/public-R-NanoStringNormCNV
Helper Functions to Normalize NanoString CNV Data
| Global functions | |
|---|---|
| NanoString.DNA.norm | Man page |
| NanoString.DNA.raw | Man page |
| PhenoData | Man page |
| apply.kd.cna.thresh | Man page Source code |
| apply.ns.cna.thresh | Man page Source code |
| calculate.replicate.concordance | Man page Source code |
| calculate.replicate.variance | Man page |
| call.cnas.with.matched.normals | Man page Source code |
| call.cnas.with.pooled.normals | Man page Source code |
| call.copy.number.values | Man page Source code |
| collapse.genes | Man page Source code |
| evaluate.replicates | Man page Source code |
| generate.plot.covariates | Man page Source code |
| generate.plot.legend | Man page Source code |
| get.ari | Man page Source code |
| get.cna.thresholds | Man page Source code |
| get.tumour.normal.ratio | Man page Source code |
| invariant.probe.norm | Man page Source code |
| load.phenodata | Man page Source code |
| make.cna.densities.plots | Man page Source code |
| make.cna.heatmap | Man page Source code |
| make.counts.heatmap | Man page Source code |
| make.invariant.probe.plot | Man page Source code |
| make.positive.control.plot | Man page Source code |
| make.restriction.fragmentation.plot | Man page Source code |
| make.sample.correlations.heatmap | Man page Source code |
| normalize.global | Man page Source code |
| normalize.per.chip | Man page Source code |
| positive.control.qc | Man page Source code |
| process.xy.probes | Man page Source code |
| restriction.fragmentation.qc | Man page Source code |
| tumour.normal.ratio.to.cn.state | Man page Source code |
| visualize.results | Man page Source code |
