NanoString.DNA.norm: Dataset of normalized NanoString DNA counts from prostate...

In uclahs-cds/public-R-NanoStringNormCNV: Helper Functions to Normalize NanoString CNV Data

Dataset of normalized NanoString DNA counts from prostate cancer patients

Description

Normalized NanoString DNA counts from 349 probes across 65 NanoString samples. The NanoString samples are the same as those found in the NanoString dataset. Invariant probe normalization was applied to raw counts using normalize.global. For additional sample information, refer to the PhenoData dataset.

Usage

NanoString.DNA.norm

Format

A data-frame with 68 columns and 349 rows. The first three columns provide probe information:

CodeClass:

probe type which can include: Endogenous, Housekeeping, Invariant, Negative, Positive, RestrictionSite.

Name:

probe name which is unique to the row

Accession:

probes with matching Accession values correspond to the same gene/segment (for endogenous probes)

The following columns indicate the sample (column names are sample IDs). The rows indicate the probe. The contents of the data-frame are normalized NanoString DNA counts.

Sample ID notation details are as follows. The first 8 characters are the patient ID. Sample type is denoted by one of the following: F = tumour (fresh frozen), P = tumour (FFPE) or B = reference (blood). Additionaly, 'M1' and 'M2' are used here to differentiate between replicates.

Author(s)

Dorota Sendorek

Examples

	data(NanoString.DNA.norm);

uclahs-cds/public-R-NanoStringNormCNV documentation built on May 31, 2024, 9:09 p.m.