quickSurv: quickSurv Function

In uebvhir/anaStatsUEB: Statistical analysis function, Statistics and Bioinformatics Unit (UEB, VHIR)

quickSurv Function

Description

Realiza supervivencia Kaplan Meier, cox para variables cuali y cuanti

Usage

#' @usage \method{names}{mtc_bis}(x) <- value

Arguments

time	for right censored data, this is the follow up time. For interval data, the first argument is the starting time for the interval.
event	the status indicator. Factor with two levels
tag.event	A character value. Level of event
covariate	variables a evaluar
data	an optional matrix or data frame (or similar: see model.frame) containing the variables in the formula formula.
do.plot	A logical value indicating if show plot. Default value is TRUE.
pval.plot	A logical value indicating if show pvalue at plot. Default value is TRUE.
title.plot	a title for the plot.
summary.km	type of table to produce for Kaplan-Meier summary. Possible values for type are "ht", "r" or "no". Default value is "ht".
do.cox	A logical value indicating if show cox regression. Default value is TRUE.
summary.cox	type of table to produce for Kaplan-Meier summary. Possible values for type are "ht", "r" or "no". Default value is "ht".
title.cox	a title for the Cox regression.
pval.cut	Pvalor que s'utlitza per mostrar el Cox. Per defecte 0.05

Value

results:

coeff:

plot

Author(s)

Miriam Mota [e-mail]

Examples

# set.seed(81)
# dat <- data.frame(tm = c(rnorm(50,12*4,19), rnorm(50,12*2,12)),
# ev = factor(sample(c("Vivo", "Muerto"), 100, replace = TRUE)) ,
#                   iq = factor(c(rep("A",50), rep("B",50))), age = rnorm(100,22,6))
#
# quickSurv(time = tm,event = ev, covariate = age, tag.event = "Muerto",
#          data = dat, do.cox = TRUE,summary.cox = "ht")


# quickSurv(time = tm,event = ev, covariate = iq, tag.event = "Muerto",
#           data = dat, surv.median.line = "hv",
#           cox = TRUE, summary.cox = "ht" )

# quickSurv(time = tm,event = ev, covariate = iq, tag.event = "Muerto",
#           data = dat, surv.median.line = "hv", cumevents = TRUE,
#          cox = TRUE, summary.cox = "ht")

uebvhir/anaStatsUEB documentation built on May 6, 2023, 3:46 a.m.