API for ukaraoz/microtrait
microTrait
| Global functions | |
|---|---|
| GC_count | Source code |
| add.metadata | Man page Source code |
| add_quotes | Source code |
| analyze_genome | Source code |
| analyze_orfs | Source code |
| analyze_proteins | Source code |
| analyze_rRNA | Source code |
| analyze_tRNA | Source code |
| assert.rules | Man page Source code |
| assert.rulesforgenome | Man page Source code |
| available.external | Source code |
| build.taxa.model | Man page Source code |
| calc_intergenome_variance | Man page Source code |
| calc_mixeddist | Man page Source code |
| cluster_traitmatrix | Man page Source code |
| combine.gp.results | Source code |
| combine.grodon.results | Source code |
| combine.results | Man page Source code |
| compute.prevalence | Man page |
| convert_traitdatatype | Man page Source code |
| cor.mixed | Source code |
| count.traitsforgenome | Man page Source code |
| countseq.fasta | Source code |
| cramersV | Source code |
| define_guilds | Man page Source code |
| detect.domains.fromdomtblout | Man page Source code |
| detect.genes.fromdomtblout | Man page Source code |
| download.arcbacribosomal | Man page Source code |
| download.dbcan | Man page Source code |
| download.microtrait | Man page Source code |
| evaluate.rule | Man page Source code |
| extract.traits | Man page Source code |
| extract.traits.parallel | Man page Source code |
| extract_features | Source code |
| extract_rRNA | Source code |
| fetch.results | Man page Source code |
| filter.bycoverage.domtblout | Man page Source code |
| gp.resultsummary | Man page Source code |
| hello | Man page |
| hmms_fromrules | Man page |
| j2 | Source code |
| jaccard | Source code |
| make.genomeset.results | Man page Source code |
| map.traits.fromdomtblout | Man page Source code |
| melt_dist | Man page |
| myTryCatch | Source code |
| nucl_analysis | Source code |
| nucl_count | Source code |
| nucl_counts | Source code |
| nuclcheck | Man page Source code |
| parse.hmmeroutput | Source code |
| phicoef | Source code |
| prep.hmmmodels | Man page Source code |
| protdict_setup | Source code |
| read.domtblout | Man page Source code |
| read.tblout | Man page Source code |
| redefine.binarytraits | Man page |
| removequotes | Source code |
| rule2genes | Man page Source code |
| rule2parts | Man page Source code |
| rulename2ruleboolean | Man page Source code |
| rules | Man page |
| run.barrnap | Source code |
| run.bedtools | Source code |
| run.consentrait.singletrait | Man page Source code |
| run.hmmsearch | Man page Source code |
| run.predictGrowth | Man page Source code |
| run.prodigal | Man page Source code |
| run.tRNAscan | Source code |
| run_ogtmodel | Source code |
| set.geneprofile | Man page Source code |
| splitSeqsToFiles | Man page Source code |
| trait.continuous2binary | Man page |
| trait.normalize | Man page Source code |
| trait2trait_corr | Man page Source code |
| trait2trait_corr2 | Source code |
| unwrap.rules | Man page Source code |
| write.genomeset.results | Man page Source code |
