define_guilds: Define guild matrix.

In ukaraoz/microtrait: microTrait

Define guild matrix.

Description

Define guild matrix.

Usage

define_guilds(
  trait_matrix,
  hclust_rows,
  hclust_cols,
  idcol = "id",
  annot_cols = c("mingentime", "ogt"),
  nguilds,
  guildsizecutoff = 50,
  traitvariability_threshold = 0.01,
  width,
  height,
  heatmap_width,
  heatmap_height,
  rightannotation_width,
  topannotation_height,
  bottomannotation_height,
  outdir,
  dataset,
  verbose = TRUE
)

Arguments

trait_matrix	trait_matrix
nguilds	nguilds
clusters_traitmatrix	clusters_traitmatrix

ukaraoz/microtrait documentation built on March 18, 2024, 5:47 p.m.