parseStringKB | R Documentation |
Process STRINGdb data into a format usable by this enrichment pipeline. Assumes that if a protein targets a protein it also targets the gene.
parseTRED(in.file)
ents.file |
A tab separated file containing the entries of STRINGdb |
rels.file |
A tab separated file describing the interactions between the entries of STRINGdb |
verbose |
A boolean value, indicating whether the output should include verbose messaging. Defaults to FALSE. |
A list of two dataframes, ents and rels. The ents dataframe is all the entries from the selected database. The rels table describes the relations between the entries
entsRels <- parseStringKB("string.ents", "string.rels")
ents <- entsRels$ents
rels <- entsRels$rels
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.