afs_to_counts | R Documentation |
This is intended for computing allele count data for a large number of individuals,
too many to do everything in working memory.
It assumes that the allele frequencies have already been computed and are stored in .rds
files,
split into consecutive blocks for a set of individuals.
afs_to_counts(
genodir,
outdir,
chunk1,
chunk2,
overwrite = FALSE,
verbose = TRUE
)
genodir |
Directory with genotype files split in chunks created by |
outdir |
Directory where allele count data will be stored |
chunk1 |
Index of the first chunk of individuals |
chunk2 |
Index of the second chunk of individuals |
overwrite |
Overwrite existing files (default |
verbose |
Print progress updates |
extract_counts
Does the same thing in one step for smaller data.
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