compare_fits2: Compare the fit of two qpgraph models
In uqrmaie1/admixtools: Inferring demographic history from genetic data

compare_fits2

R Documentation

Compare the fit of two qpgraph models

Description

Takes two data frames with model fits computed on two graphs for on the same populations and tests whether the scores of one graph are significantly better than the scores of the other

Usage

compare_fits2(fits1, fits2, boot = FALSE)

Arguments

`fits1`	The fits of the first graph
`fits2`	The fits of the second graph
`boot`	should match the `boot` parameter in `qpgraph_resample_snps` (`FALSE` by default)

Examples

## Not run: 
nblocks = dim(example_f2_blocks)[3]
train = sample(1:nblocks, round(nblocks/2))
fits1 = qpgraph_resample_snps(example_f2_blocks[,,train], graph = graph1,
                              f2_blocks_test = example_f2_blocks[,,-train])
fits2 = qpgraph_resample_snps(example_f2_blocks[,,train], graph = graph2,
                              f2_blocks_test = example_f2_blocks[,,-train])
compare_fits2(fit1, fit2)

## End(Not run)

uqrmaie1/admixtools documentation built on Nov. 3, 2024, 12:56 a.m.