dynRangePlot: Produce signal-abundance plot to evaluate dynamic range

In usnistgov/erccdashboard_preBioC: Assess Differential Gene Expression Experiments with ERCC Controls

Description

Produce signal-abundance plot to evaluate dynamic range

Usage

dynRangePlot(exDat)

Arguments

exDat

list, contains input data and stores analysis results

Examples

data(SEQC.Example)

exDat <- initDat(datType="count", isNorm=FALSE, exTable=MET.CTL.countDat,
                 filenameRoot="testRun", sample1Name="MET",
                 sample2Name="CTL", erccmix="RatioPair",
                 erccdilution=1/100, spikeVol=1, totalRNAmass=0.500,
                 choseFDR=0.1)

exDat <- est_r_m(exDat)

exDat <- dynRangePlot(exDat)

exDat$Figures$dynRangePlot

usnistgov/erccdashboard_preBioC documentation built on May 3, 2019, 2:38 p.m.