mixmetrics: Calculate the fraction of mixture components in a mixture...

In usnistgov/mixturesolutions: Analysis of Mixture count data

Description

mixmetrics solves a linear model based on the components and proportions listed. Returns a modified object with model results and predicted count values.

Usage

mixmetrics(mrnatype = "internalconsensus", splittype = "none",
  prenormalized = TRUE, modeltype = "twomix", indf, idnames = "id",
  idvars = 1, trueproportions, componentnames = c("Brain", "Liver",
  "Placenta"), mixnames = c("Mix1", "Mix2"), annot = c("Replicate"), ...)

Arguments

mrnatype	Internalconsensus,externalagreement,none,or ercc; How to calculate the measured fraction in a sample.
splittype	'none' - not currently implemented: How to split the data rows based on columns in idvars.
prenormalized	TRUE/FALSE - if data is already normalized.
modeltype	"twomix","threemix": How many different mixtures are present in your dataset.
indf	Input dataframe: counts and idvariables.
idvars	List of columns (or names?) that are not data, but identifiers of gene names(1st) or splitting features (not 1st, not implemented).
trueproportions	Data frame consisting of the true mixture proportions of each mix, in order.
componentnames	List of column names of indf for each component.
mixnames	List of column names of indf corresponding to each mix.
annot	How to refer to the various copies of each component/mix after they are split/merged.
...	Anything else.

usnistgov/mixturesolutions documentation built on May 3, 2019, 2:38 p.m.