bio.save: Import 'BIO' tables to a 'rangeMapper' project.

In valcu/rangeMapper: A Platform for the Study of Macro-Ecology of Life History Traits

Description

Import tables (e.g. life history data) to an active rangeMapper project.

Usage

bio.save(con, loc, tableName, ...)

bio.merge(con, tableName, ...)

metadata2bio(con, ...)

Arguments

con	an sqlite connection pointing to a valid rangeMapper project.
loc	file location or data.frame name.
tableName	if missing, the name of the file or data.frame is used
...	arguments to pass to the corresponding methods: e.g. the ID, the column corresponding to the names of the range files

Value

a ‘BIO’ table is created in the corresponding rangeMapper project.

Examples

require(rangeMapper)
require(rgdal)
wd = setwd(tempdir())
r = readOGR(system.file(package = "rangeMapper",
	"extdata", "wrens", "vector_combined"), "wrens", verbose = FALSE)
dbcon = rangeMap.start(file = "wrens.sqlite", overwrite = TRUE,
	dir = tempdir() )
global.bbox.save(con = dbcon, bbox = r)
gridSize.save(dbcon, gridSize = 2)
canvas.save(dbcon)
processRanges(spdf = r, con =  dbcon, ID = "sci_name" )

# Upload BIO tables
data(wrens)
Troglodytes  = wrens[grep("Troglodytes", wrens$sci_name), c(2, 5)]
bio.save(con = dbcon, loc = Troglodytes,  ID = "sci_name")

setwd(wd)


## Not run: 
require(rangeMapper)
require(rgdal)
wd = setwd(tempdir())
r = readOGR(system.file(package = "rangeMapper",
  "extdata", "wrens", "vector_combined"), "wrens", verbose = FALSE)
dbcon = rangeMap.start(file = "wrens.sqlite", overwrite = TRUE,
	dir = tempdir() )
global.bbox.save(con = dbcon, bbox = r)
gridSize.save(dbcon, gridSize = 2)
canvas.save(dbcon)
processRanges(spdf = r, con =  dbcon, ID = "sci_name", metadata = rangeTraits() )

wrensPath = system.file(package = "rangeMapper", "data", "wrens.csv")
bio.save(con = dbcon, loc = wrensPath,  ID = "sci_name")
bio.merge(dbcon, "wrensNew")
metadata2bio(dbcon)
setwd(wd)


## End(Not run)

valcu/rangeMapper documentation built on Feb. 6, 2021, 8:20 p.m.