Man pages for varemo/piano
Platform for integrative analysis of omics data
| consensusHeatmap | Heatmap of top consensus gene sets |
| consensusScores | Top consensus gene sets and boxplot |
| diffExp | Perform differential expression analysis |
| exploreGSAres | Explore GSA results |
| extractFactors | Extracts 'ArrayData' factors |
| geneSetSummary | Gene set summary |
| GSAheatmap | Heatmap of top significant gene sets |
| gsa_input | Random input data for gene set analysis |
| gsa_results | Gene set analysis result data |
| GSAsummaryTable | Gene set analysis summary table |
| loadGSC | Load a gene set collection |
| loadMAdata | Load and preprocess microarray data |
| networkPlot | Gene set network plot |
| networkPlot2 | Gene set network plot |
| piano-package | Piano - Platform for Integrative ANalysis of Omics data |
| polarPlot | Polar plot |
| runGSA | Gene set analysis |
| runGSAhyper | Gene set analysis with Fisher's exact test |
| runQC | Run quality control |
| writeFilesForKiwi | Write files for Kiwi |
