matchcontrols: matchcontrols

In vcastro/Ri2b2matchcontrols: Match controls to patients using coarsened exact matching (cem) in i2b2

Description

The main match controls function to match controls using cem and generate an html report and a list of matched controls

Usage

matchcontrols(d, case_patientset_name = "None Given",
  controlpool_patientset_name = "None Given", controls_to_match = 1,
  match_variables = c("age", "gender", "race"))

Arguments

d	A data frame of patients with matching variables and cohort field
case_patientset_name	Name of the case patient set (for report)
controlpool_patientset_name	Name of the control pool patient set (for report)
controls_to_match	Number of controls to match to each patient set
match_variables	A string vector of variable names to use for matching

Value

A list with the elements

report_text	String of the html report
html_report	Full path to html report file in tmp directory
match_data	The full patient data frame with match strata and which controls were matched
cem_data	The cem object from the cem function.
matched_controls	The final list of matched controls (can be used to create an i2b2 patientset)

Examples

#Not run

vcastro/Ri2b2matchcontrols documentation built on May 29, 2019, 11:57 a.m.