Files in vdorie/dbarts

Discrete Bayesian Additive Regression Trees Sampler

.Rbuildignore

.Rinstignore

.gitignore

DESCRIPTION

NAMESPACE

R/A_class.R R/bart.R R/data.R R/dbarts.R R/generics.R R/guessNumCores.R R/hooks.R R/model.R R/multipleAssignment.R R/partialDependence.R R/plot.R R/plotTree.R R/rbart.R R/sliceSample.R R/utility.R R/xbart.R README.md

TODO

cleanup

configure

configure.ac

configure.win

inst/CITATION

inst/NEWS.Rd

inst/common/almostLinearBinaryData.R inst/common/friedmanData.R inst/common/hillData.R inst/common/multithreadData.R inst/common/pdData.R inst/common/probitData.R

inst/include/dbarts/R_C_interface.hpp

inst/include/dbarts/bartFit.hpp

inst/include/dbarts/control.hpp

inst/include/dbarts/cstdint.hpp

inst/include/dbarts/data.hpp

inst/include/dbarts/model.hpp

inst/include/dbarts/random.hpp

inst/include/dbarts/results.hpp

inst/include/dbarts/scratch.hpp

inst/include/dbarts/state.hpp

inst/include/dbarts/types.hpp.in

inst/include/dbarts/types.hpp.win

man/bart.Rd man/dbarts.Rd man/dbartsControl.Rd man/dbartsData.Rd man/dbartsSampler-class.Rd man/guessNumCores.Rd man/makeind.Rd man/pdbart.Rd man/rbart.Rd man/xbart.Rd

src/Makevars.in

src/Makevars.win

src/R_C_interface.cpp

src/R_interface.cpp

src/R_interface.hpp

src/R_interface_common.cpp

src/R_interface_common.hpp

src/R_interface_crossvalidate.cpp

src/R_interface_crossvalidate.hpp

src/R_interface_rbart.cpp

src/R_interface_rbart.hpp

src/R_interface_sampler.cpp

src/R_interface_sampler.hpp

src/config.hpp.in

src/config.hpp.win

src/crossvalidate.cpp

src/crossvalidate.hpp

src/dbarts/Makefile

src/dbarts/bartFit.cpp

src/dbarts/binaryIO.cpp

src/dbarts/binaryIO.hpp

src/dbarts/birthDeathRule.cpp

src/dbarts/birthDeathRule.hpp

src/dbarts/changeRule.cpp

src/dbarts/changeRule.hpp

src/dbarts/config.hpp.in

src/dbarts/config.hpp.win

src/dbarts/functions.cpp

src/dbarts/functions.hpp

src/dbarts/likelihood.cpp

src/dbarts/likelihood.hpp

src/dbarts/node.cpp

src/dbarts/node.hpp

src/dbarts/parameterPrior.cpp

src/dbarts/state.cpp

src/dbarts/swapRule.cpp

src/dbarts/swapRule.hpp

src/dbarts/tree.cpp

src/dbarts/tree.hpp

src/dbarts/treePrior.cpp

src/external/Makefile

src/external/config.h.in

src/external/config.h.win

src/external/io.c

src/external/random.c

src/external/randomBase.c

src/external/randomNorm.c

src/guessNumCores.cpp

src/guessNumCores.hpp

src/include/external/R.h

src/include/external/Rinternals.h

src/include/external/io.h

src/include/external/random.h

src/include/external/stats.h

src/include/misc/adaptiveRadixTree.h

src/include/misc/alloca.h

src/include/misc/binaryIO.h

src/include/misc/intrinsic.h

src/include/misc/linearAlgebra.h

src/include/misc/memalign.h

src/include/misc/partition.h

src/include/misc/simd.h

src/include/misc/stats.h

src/include/misc/stddef.h

src/include/misc/string.h

src/include/misc/thread.h

src/include/misc/types.h.in

src/include/misc/types.h.win

src/include/rc/bounds.h

src/include/rc/util.h

src/makeModelMatrixFromDataFrame.c

src/makeModelMatrixFromDataFrame.h

src/misc/Makefile

src/misc/adaptiveRadixTree.c

src/misc/binaryIO.c

src/misc/blockingThreadManager.c

src/misc/config.h.in

src/misc/config.h.win

src/misc/hierarchicalThreadManager.c

src/misc/linearAlgebra.c

src/misc/linearAlgebra_avx.c

src/misc/linearAlgebra_neon.c

src/misc/linearAlgebra_sse2.c

src/misc/moments.c

src/misc/moments_sse2.c

src/misc/partition.c

src/misc/partition_avx2.c

src/misc/partition_body.c

src/misc/partition_neon.c

src/misc/partition_sse2.c

src/misc/partition_sse4_1.c

src/misc/pthread.h

src/misc/simd.c

src/misc/string.c

src/misc/thread.c

src/rc/Makefile

src/rc/bounds.c

src/rc/util.c

tests/testthat.R tests/testthat/test-01-dbartsDataArgs.R tests/testthat/test-02-dbartsModelArgs.R tests/testthat/test-03-dbartsControl.R tests/testthat/test-04-continuousResponse.R tests/testthat/test-05-binaryResponse.R tests/testthat/test-06-dbartsSampler.R tests/testthat/test-07-multithreaded.R tests/testthat/test-08-xbart.R tests/testthat/test-09-generics.R tests/testthat/test-10-makeModelMatrix.R tests/testthat/test-11-multipleAssignment.R tests/testthat/test-12-multipleChains.R tests/testthat/test-13-bart2.R tests/testthat/test-14-rbart.R tests/testthat/test-15-simd.R tests/testthat/test-16-pdbart.R tests/testthat/test-17-rng.R tests/testthat/test-18-extractedTrees.R tests/testthat/test-19-splitProbabilities.R

tools/build-aux/config.guess

tools/build-aux/config.sub

tools/build-aux/install-sh

tools/m4/ax_check_compile_flag.m4

tools/m4/ax_compiler_ext.m4

tools/m4/ax_compiler_vendor.m4

tools/m4/ax_cxx_namespace_std.m4

tools/m4/ax_ext.m4

tools/m4/ax_ext_solaris.m4

tools/m4/ax_func_posix_memalign.m4

tools/m4/ax_gcc_x86_avx_xgetbv.m4

tools/m4/ax_gcc_x86_cpuid.m4

tools/m4/ax_log1p_in_namespace_std.m4

tools/m4/ax_pthread.m4

tools/m4/ax_snprintf_in_namespace_std.m4

vignettes/.gitignore

vignettes/gibbs_sampler_mixture_model.Rmd

vignettes/references.bib

vignettes/working_with_saved_trees.Rmd

vdorie/dbarts documentation built on Feb. 7, 2024, 11:13 a.m.