Man pages for vdumeaux/mixtR
Matched Interaction across Tissues (MIxT) data analysis
| clinical.ranksum | Compute associations between gene set/module and patient... |
| cohort_boxplot | PLot bxoplot distribution of ranksum for a defined gene set... |
| cohort_heatmap | Plot reordered heatmap according to sig.ranksum output |
| cohort_scatterplot | Plot scatterplot of ranksums |
| functional.enrichment | Functional enrichment analyses for genes partitioned by... |
| heatmap.clinical | Plot clinical variables |
| heatmap.color.scheme | Break points and color vector for heatmaps. |
| heatmap.ddr | Flexible clustering function |
| heatmap.is.valid.color.scheme | Function for checking color schemes |
| heatmap.key | Plot heatmap key |
| heatmap.labels | Plot labels in a viewport |
| heatmap.labels.cex | Return a cex value for text plotted in a viewport |
| heatmap.map | Plot heatmap |
| heatmap.simple | Draw full heatmap figures |
| hyper.fisher | Hypergeometric test |
| read.gmt.msigdb | Read MSigdb gmt files |
| sig.ranksum | Patient linear ordering based on gene set expression |
| stat.ranksum | Compute association between gene sets/modules across tissues |
