cohort_boxplot: PLot bxoplot distribution of ranksum for a defined gene set...

In vdumeaux/mixtR: Matched Interaction across Tissues (MIxT) data analysis

Description

PLot bxoplot distribution of ranksum for a defined gene set according to ROI categories

Usage

cohort_boxplot(mixt.ranksum, tissue, module, cohort.name = "all",
  orderByTissue = NULL, orderByModule = NULL)

Arguments

mixt.ranksum	Output of sig.ranksum()
tissue	character string that provides the name of tissue we want to look at
module	character string that provides the name of the module we want to generate a heatmap for
cohort.name	character string that provides the name of the patient cohort we select patients from, defaults is set to 'all'
orderByTissue	the tissue where the orderByModule module is found. Default is the same tissue.
orderByModule	patient ordering can be based on another module/gene set expression.

vdumeaux/mixtR documentation built on May 3, 2019, 4:58 p.m.