Man pages for velocyto-team/velocyto.R
RNA velocity estimation in R
| ac | adjust colors, while keeping the vector names |
| armaCor | A slightly faster way of calculating column correlation... |
| filter.genes.by.cluster.expression | Filter genes by requirining minimum average expression within... |
| find.ip.sites | identify positions of likely internal priming sites by... |
| gene.relative.velocity.estimates | Estimate RNA velocity using gene-relative slopes |
| global.velcoity.estimates | Structure-based gene velocity estimation |
| pca.velocity.plot | PCA-based visualization of the velocities |
| read.gene.mapping.info | read in detailed molecular mapping info from hdf5 file as... |
| read.loom.matrices | Read in loom matrices of spliced/unpsliced reads as prepared... |
| read.smartseq2.bams | read.smartseq2.bams |
| read.strtc1.bams | Read in cell-specific bam files for STRT/C1 |
| show.velocity.on.embedding.cor | Visualize RNA velocities on an existing embedding using... |
| show.velocity.on.embedding.eu | Visualize RNA velocities on an existing embedding using... |
| tSNE.velocity.plot | Joint t-SNE visualization of the velocities by joint t-SNE... |
| velocyto.R-package | A short title line describing what the package does |
