Description Usage Arguments Value
View source: R/momentum_routines.R
Read in cell-specific bam files for STRT/C1
1 2 | read.strtc1.bams(bam.files, annotation.file, min.exon.count = 100,
n.cores = defaultNCores(), min.umi.reads = 1)
|
bam.files |
list of bam files (one per cell) |
annotation.file |
gene annotation refFlat file |
min.exon.count |
minimum number of molecules (across all cells) for the exon to be considered expressed |
n.cores |
number of cores to use |
min.umi.reads |
minimum number of read required per UMI/gene combination to be counted (defaults to 1) |
a list structure analogous to the return of read.smartseq2.bams(), counting molecules instead of reads.
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