wbarplot: wbarplot

In vertesy/MarkdownReports.v2.9.5: LEGACY VERSION - Generate Scientific Figures and Reports Easily

Description

Create and save bar plots as .pdf, in "OutDir". If mdlink =T, it inserts a .pdf and a .png link in the markdown report, set by "path_of_report". The .png version is not created, only the link is put in place, not to overwrite previous versions.

Usage

wbarplot(variable, ..., col = "gold1", sub = F,
  plotname = substitute(variable), main = plotname, tilted_text = F,
  ylimits = NULL, hline = F, vline = F, filtercol = 1, lty = 1,
  lwd = 2, lcol = 2, errorbar = F, upper = 0, lower = upper,
  arrow_width = 0.1, arrow_lwd = 1,
  savefile = UnlessSpec("b.save.wplots"), w = UnlessSpec("b.defSize", 7),
  h = w, incrBottMarginBy = 0, mdlink = ww.set.mdlink())

Arguments

variable	The variable to plot.
...	Pass any other parameter of the corresponding plotting function (most of them should work).
col	Color of the plot.
sub	Subtitle below the plot.
plotname	The name of the file saved.
main	The title of the plot.
tilted_text	Use 45 degree x-labels if TRUE. Useful for long, but not too many labels.
ylimits	Defines the Y axis range. Replacement for the standard "ylim" argument.
hline	Draw a horizontal line at the value you pass on to it. Useful to display a threshold. Design the line by "lty", "lwd" & "lcol" parameters.
vline	Draw a vertical line at the value you pass on to it. Useful to display a threshold. Design the line by "lty", "lwd" & "lcol" parameters.
filtercol	Color bars below / above the threshold with red / green. Define the direction by -1 or 1. Takes effect if "hline" is defined.
lty	Linetype, defined by numbers 1-6.
lwd	Linewidth. Set to 2 by default.
lcol	Color of the line.
errorbar	Draw error bars if TRUE. Pass on the value in parameters "upper" and "lower". Refine the look by "w" and "arrow_lwd".
upper	Size of the upper error bar.
lower	Size of the lower error bar. By default, it equals the upper error bar.
arrow_width	Width of the arrow head.
arrow_lwd	Line width for the error bars.
savefile	Save plot as pdf in OutDir, TRUE by default.
w	Width of the saved pdf image, in inches.
h	Height of the saved pdf image, in inches.
incrBottMarginBy	Increase the blank space at the bottom of the plot. Use if labels do not fit on the plot.
mdlink	Insert a .pdf and a .png image link in the markdown report, set by "path_of_report".

Examples

wbarplot (variable =  , ... =  , col = gold1, sub = F, plotname = substitute(variable), main = substitute(variable), w = 7, h = w, incrBottMarginBy = 0, mdlink = F, tilted_text = F, hline = F, vline = F, filtercol = 1, lty = 1, lwd = 2, lcol = 2, errorbar = F, upper = 0, lower = upper, arrow_width = 0.1, arrow_lwd = 1)

vertesy/MarkdownReports.v2.9.5 documentation built on May 22, 2019, 4 p.m.