Development/Dependencies.R

In vertesy/ggExpress: ggExpress is the fastest way to create, annotate and export plots in R

Dependency file generated on Thu Oct 24 15:20:01 2024 

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ggExpress.R
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$`c("package:Connectome.tools", "package:MarkdownHelpers")`
[1] "unless.specified"

$`c("package:Connectome.tools", "package:Seurat.utils", "package:ggExpress", "package:CodeAndRoll2", "package:dplyr", "package:tidyr", "package:tibble")`
[1] "as_tibble"

$`c("package:dplyr", "package:ggplot2")`
[1] "sym"

$`c("package:MarkdownHelpers", "package:CodeAndRoll2")`
[1] "iround"

$`c("package:MarkdownReports", "package:CodeAndRoll2", "package:stats")`
[1] "median"

$`c("package:ReadWriter", "package:Stringendo")`
[1] "sppp"

$`c("package:Seurat.utils", "package:ggExpress", "package:cowplot")`
[1] "plot_grid" "save_plot"

$`c("package:Seurat.utils", "package:ggExpress", "package:MarkdownHelpers")`
[1] "llogit"

$`c("package:Seurat.utils", "package:ggExpress")`
[1] "qqSave" "qsave" 

$`c("package:Seurat.utils", "package:ggplot2")`
[1] "coord_polar"   "element_text"  "geom_hline"    "geom_vline"    "labs"         
[6] "scale_x_log10" "scale_y_log10" "theme"        

$`c("package:Seurat.utils", "package:MarkdownHelpers", "package:Stringendo")`
[1] "percentage_formatter"

$`c("package:Seurat.utils", "package:MarkdownReports", "package:MarkdownHelpers", "package:Stringendo")`
[1] "iprint"

$`c("package:Seurat.utils", "package:Stringendo")`
[1] "kpp"

$`c("package:UVI.tools", "package:ggpubr")`
[1] "ggbarplot"

$`c("package:UVI.tools", "package:Seurat.utils", "package:ggExpress", "package:tictoc")`
[1] "tic" "toc"

$`c("package:UVI.tools", "package:Seurat.utils", "package:tibble")`
[1] "rownames_to_column"

$`c("package:UVI.tools", "package:tidyr")`
[1] "pivot_longer"

$`package:base`
 [1] "as.character"  "as.data.frame" "as.factor"     "as.numeric"    "c"            
 [6] "cat"           "cbind"         "colnames"      "factor"        "getwd"        
[11] "is.character"  "is.data.frame" "is.logical"    "is.matrix"     "is.null"      
[16] "is.numeric"    "isFALSE"       "length"        "make.names"    "make.unique"  
[21] "max"           "message"       "names"         "ncol"          "nrow"         
[26] "paste"         "paste0"        "print"         "rep"           "rev"          
[31] "round"         "sapply"        "signif"        "sort"          "stop"         
[36] "stopifnot"     "substitute"    "sum"           "unique"        "unlist"       
[41] "which"        

$`package:CodeAndRoll2`
[1] "is.list2"

$`package:ggExpress`
[1] ".assertMaxCategories" "ggVennDiagram"        "qMarkdownImageLink"   "qqqAxisLength"       
[5] "qqqList.2.DF.ggplot"  "qqqNamed.Vec.2.Tbl"  

$`package:ggplot2`
 [1] "annotation_logticks" "element_rect"        "expansion"           "geom_abline"        
 [5] "geom_density_2d"     "guide_legend"        "guides"              "position_fill"      
 [9] "position_stack"      "scale_fill_gradient" "scale_x_continuous"  "ylab"               

$`package:ggpubr`
 [1] "ggboxplot"          "ggdensity"          "gghistogram"        "ggpar"             
 [5] "ggpie"              "ggscatter"          "ggstripchart"       "ggviolin"          
 [9] "grids"              "stat_compare_means" "stat_cor"          

$`package:MarkdownHelpers`
[1] "ww.FnP_parser"         "ww.set.file.extension" "ww.ttl_field"         

$`package:Stringendo`
[1] "FixPlotName"            "flag.nameiftrue"        "parseParamStringWNames"
[4] "stopif"                

$`package:utils`
[1] "head"  "stack"

c("Connectome.tools", "MarkdownHelpers")
c("Connectome.tools", "Seurat.utils", "ggExpress", "CodeAndRoll2", "dplyr", "tidyr", "tibble")
c("dplyr", "ggplot2")
c("MarkdownHelpers", "CodeAndRoll2")
c("MarkdownReports", "CodeAndRoll2", "stats")
c("ReadWriter", "Stringendo")
c("Seurat.utils", "ggExpress", "cowplot")
c("Seurat.utils", "ggExpress", "MarkdownHelpers")
c("Seurat.utils", "ggExpress")
c("Seurat.utils", "ggplot2")
c("Seurat.utils", "MarkdownHelpers", "Stringendo")
c("Seurat.utils", "MarkdownReports", "MarkdownHelpers", "Stringendo")
c("Seurat.utils", "Stringendo")
c("UVI.tools", "ggpubr")
c("UVI.tools", "Seurat.utils", "ggExpress", "tictoc")
c("UVI.tools", "Seurat.utils", "tibble")
c("UVI.tools", "tidyr")
base
CodeAndRoll2
ggExpress
ggplot2
ggpubr
MarkdownHelpers
Stringendo
utils