DNAcopy-internal: Internal DNAcopy functions

In veseshan/DNAcopy: DNA Copy Number Data Analysis

Internal DNAcopy functions

Description

Internal functions of package DNAcopy.

Usage

changepoints(genomdat, data.type = "logratio", alpha = 0.01, weights = NULL,
                 sbdry, sbn, nperm = 10000, p.method="hybrid", min.width=2,
                 kmax=25, nmin = 200, trimmed.SD = NULL, undo.splits = "none",
                 undo.prune = 0.05, undo.SD = 3, verbose = 1, ngrid=100,
                 tol=1e-6) 
changepoints.prune(genomdat, lseg, change.cutoff=0.05)
changepoints.sdundo(genomdat, lseg, trimmed.SD, change.SD=3)
trimmed.variance(genomdat, trim=0.025)
inflfact(trim)
exon.changepoint(exondat, ngrid=100, tol=1e-6)

Details

These are not to be called directly by the user

veseshan/DNAcopy documentation built on Oct. 18, 2023, 8:30 p.m.