DNAcopy: Results of segmenting a CNA data object

In veseshan/DNAcopy: DNA Copy Number Data Analysis

Results of segmenting a CNA data object

Description

The results of segmenting data from copy number array experiments from programs such as circular binary segmentation (CBS).

Usage

## S3 method for class 'DNAcopy'
print(x, showSegRows=FALSE, ...)

Arguments

x	an object of class DNAcopy – output of segment.
showSegRows	option to show row numbers for the segment start and end. default is FALSE.
...	arguments to be passed onto print command called within.

Details

An object of class DNAcopy. There is a print method that prints the results in a tabular format. Each row gives the sample, the chromosome, the start and end map locations, the number of markers and the mean of each segment.

Value

data	The original CNA object which was the input for segment
ID	sample identifier.
chrom	the chromosome within the sample.
loc.start	the starting map location of the segment
loc.end	the ending map location of the segment
num.mark	the number of markers in the segment
data.type	the segment mean.
call	the call that produced the object.

veseshan/DNAcopy documentation built on Oct. 18, 2023, 8:30 p.m.