seqDNAcopy-internal: Internal seqDNAcopy functions
In veseshan/seqDNAcopy: Copy number data analysis using DNA sequencing data
Description
Internal functions of package seqDNAcopy.
Usage
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chromRange(i, chr="")
bam2fragments(bamFile, X=FALSE, mapq=20)
frags2counts(nfmid, tfmid, rstart, rend)
fragments2dataframe(nbam, tbam, iSizeLim=c(75,750), gbuild="hg19")
bams2counts(nBamFile, tBamFile, GCcorrect=TRUE, gbuild="hg19", mapq=20,
iSizeLim=c(75,750), X=FALSE)
seqsegment(fcounts, sampleid="SeqSample", minBinCount=15, binSize=1000)
Details
These are not to be called directly by the user
veseshan/seqDNAcopy documentation built on May 3, 2019, 6:11 p.m.
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Description
Internal functions of package seqDNAcopy.
Usage
1 2 3 4 5 6 7 | chromRange(i, chr="")
bam2fragments(bamFile, X=FALSE, mapq=20)
frags2counts(nfmid, tfmid, rstart, rend)
fragments2dataframe(nbam, tbam, iSizeLim=c(75,750), gbuild="hg19")
bams2counts(nBamFile, tBamFile, GCcorrect=TRUE, gbuild="hg19", mapq=20,
iSizeLim=c(75,750), X=FALSE)
seqsegment(fcounts, sampleid="SeqSample", minBinCount=15, binSize=1000)
|
Details
These are not to be called directly by the user
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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