vgpprasad91/graph
graph: A package to handle graph data structures

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485
Source code
49
Man pages
38
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vgpprasad91/graph: graph: A package to handle graph data structures
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API

API for vgpprasad91/graph
graph: A package to handle graph data structures

Global functions
.addDefaultAttrs Source code
.align_from_to Source code
.bamIntersect Source code
.bamUnion Source code
.checkAttrLength Source code
.columnIndex Source code
.coordToIndex Source code
.createZeroBitPos Source code
.default.graph.pars Source code
.dropEdges Source code
.eAttrsFun Source code
.edgeWeight Source code
.edges_gbam Source code
.edges_mg Source code
.extractFromTo_mg Source code
.ftM2other Source code
.getAllEdges Source code
.getBAMIntersect Source code
.getEdgeIntersect Source code
.getEdgeKeys Source code
.getIntNodeUserAttrPos Source code
.getIntersectAttrs Source code
.getIntersectEdgeUserAttrPos Source code
.getMGIntersect Source code
.getMGUnionAttrs Source code
.getMGUnionWeights Source code
.getNodeAttrOrder Source code
.getNodeAttrPos Source code
.getNodeAttrVec Source code
.getUnionAttrs Source code
.getUnionEdgeSet Source code
.getUnionNodeUserAttrPos Source code
.getUnionWeights Source code
.get_edgeData_indicies Source code
.indexToCoord Source code
.makeEdgeKeys Source code
.makeMDEdgeSet Source code
.mgDegree Source code
.mgGetAttrs Source code
.mgIsAdj Source code
.mgSetAttrs Source code
.mg_node_names Source code
.mg_undirectEdges Source code
.mg_valid_node_names Source code
.mg_validate_edgeSet Source code
.mg_validate_node_names Source code
.nodeDataReplaceNodeGiven Source code
.nodeDataRetrieve Source code
.nodeIntersect Source code
.nodeUnion Source code
.node_rename_check Source code
.normalizeEdges Source code
.onUnload Source code
.remEdge Source code
.rename_edge_attributes Source code
.rename_node_attributes Source code
.report_duplicate_edges Source code
.retAttrVec Source code
.retEdgeIntersectDefaults Source code
.retEdgeUnionDefaults Source code
.retMGAttrVec Source code
.retMGEdgeUnionDefaults Source code
.retMGEdgeUnionUserAttrPos Source code
.retNodeIntersectDefaults Source code
.retNodeUnionDefaults Source code
.rowIndex Source code
.scaleEdgeSet Source code
.scaleGraphBAM Source code
.scaleMG Source code
.scaleUserAttrPos Source code
.set_attrs Source code
.test Source code
.undirectEdges Source code
.verifyAttrListNames Source code
.verifyAttrName Source code
.verifyBAMAttrs Source code
.verifyEdges Source code
.verifyMGAttrs Source code
.verifyMgEdgeSetNames Source code
.verifyMgEdges Source code
.verifyNodes Source code
DFS Man page
DFS,graph,character-method Man page
Dist Man page
Dist,distGraph-method Man page
GXL Man page
IMCA Man page
IMCAAttrs Man page
IMCAGraph Man page
MultiDiGraph Source code
MultiGraph Source code
NEL2mat Source code
NELhandler Man page
[.dist Man page
aM2bpG Source code
acc Man page
acc,clusterGraph,character-method Man page
acc,clusterGraph-method Man page
acc,graph,character-method Man page
acc,graph-method Man page
acc-methods Man page
addEdge Man page
addEdge,character,character,graphAM,missing-method Man page
addEdge,character,character,graphBAM,missing-method Man page
addEdge,character,character,graphBAM,numeric-method Man page
addEdge,character,character,graphNEL,missing-method Man page
addEdge,character,character,graphNEL,numeric-method Man page
addNode Man page
addNode,character,distGraph,list-method Man page
addNode,character,graphAM,missing-method Man page
addNode,character,graphBAM,missing-method Man page
addNode,character,graphNEL,list-method Man page
addNode,character,graphNEL,missing-method Man page
addNode,character,graphNEL-method Man page
adj Man page
adj,clusterGraph,ANY-method Man page
adj,distGraph,ANY-method Man page
adj,graphBAM,character-method Man page
adj,graphNEL,ANY-method Man page
adj-methods Man page
apopAttrs Man page
apopGraph Man page
apopLocusLink Man page
attrData-class Man page
attrDataItem Man page
attrDataItem,attrData,character,character-method Man page
attrDataItem,attrData,character,missing-method Man page
attrDataItem-methods Man page
attrDataItem<- Man page
attrDataItem<-,attrData,character,character-method Man page
attrDataItem<--methods Man page
attrDefaults Man page
attrDefaults,attrData,character-method Man page
attrDefaults,attrData,missing-method Man page
attrDefaults-methods Man page
attrDefaults<- Man page
attrDefaults<-,attrData,character,ANY-method Man page
attrDefaults<-,attrData,missing,list-method Man page
attrDefaults<--methods Man page
aveNumEdges Man page Source code
biocRepos Man page
bitToInteger Source code
bitToLogical Source code
bitToMat Source code
bitdim Source code
bitlen Source code
boundary Man page Source code
buildRepDepGraph Man page Source code
bzfile-class Man page
calcProb Man page Source code
calcSumProb Man page Source code
checkValidNodeName Source code
clearEdgeData Source code
clearNode Man page
clearNode,character,graphAM-method Man page
clearNode,character,graphBAM-method Man page
clearNode,character,graphNEL-method Man page
clearNodeData Source code
clusterGraph-class Man page Man page
clusteringCoefficient Man page
clusteringCoefficient,graph Man page
clusteringCoefficient,graph-method Man page
coerce Man page
coerce,clusterGraph,matrix-method Man page
coerce,graphAM,graphBAM-method Man page
coerce,graphAM,graphNEL-method Man page
coerce,graphAM,matrix-method Man page
coerce,graphBAM,graphAM-method Man page
coerce,graphBAM,graphNEL-method Man page
coerce,graphBAM,matrix-method Man page
coerce,graphNEL,generalGraph-method Man page
coerce,graphNEL,graphAM-method Man page
coerce,graphNEL,graphBAM-method Man page
coerce,matrix,graphAM-method Man page
combineNodes Man page
combineNodes,character,graphNEL,character-method Man page
complement Man page
complement,graph-method Man page
connComp Man page
connComp,clusterGraph-method Man page
connComp,graph-method Man page
connection-class Man page
coordToIndex Source code
degree Man page
degree,MultiGraph,missing-method Man page
degree,graph,ANY-method Man page
degree,graph,missing-method Man page
dfs,graph-method Man page
diEdgeSetToDataFrame Source code
distGraph-class Man page Man page
dumpGXL Man page
dumpGXL,connection-method Man page
dumpGXL-methods Man page
duplicatedEdges Man page Source code
eWV Man page
edgeData Man page
edgeData,graph,character,character,character-method Man page
edgeData,graph,character,character,missing-method Man page
edgeData,graph,character,missing,character-method Man page
edgeData,graph,missing,character,character-method Man page
edgeData,graph,missing,missing,character-method Man page
edgeData,graph,missing,missing,missing-method Man page
edgeData,graphBAM,character,character,character-method Man page
edgeData,graphBAM,character,missing,character-method Man page
edgeData,graphBAM,missing,character,character-method Man page
edgeData,graphBAM,missing,missing,character-method Man page
edgeData,graphBAM,missing,missing,missing-method Man page
edgeData-methods Man page
edgeData<- Man page
edgeData<-,graph,character,character,character,ANY-method Man page
edgeData<-,graph,character,character,character-method Man page
edgeData<-,graph,character,missing,character,ANY-method Man page
edgeData<-,graph,character,missing,character-method Man page
edgeData<-,graph,missing,character,character,ANY-method Man page
edgeData<-,graph,missing,character,character-method Man page
edgeData<-,graphBAM,character,character,character,ANY-method Man page
edgeData<-,graphBAM,character,character,character-method Man page
edgeData<-,graphBAM,character,missing,character,ANY-method Man page
edgeData<-,graphBAM,character,missing,character-method Man page
edgeData<-,graphBAM,missing,character,character,ANY-method Man page
edgeData<-,graphBAM,missing,character,character-method Man page
edgeData<-,graphBAM,missing,missing,character,ANY-method Man page
edgeData<-,graphBAM,missing,missing,character-method Man page
edgeData<--methods Man page
edgeDataDefaults Man page
edgeDataDefaults,graph,character-method Man page
edgeDataDefaults,graph,missing-method Man page
edgeDataDefaults-methods Man page
edgeDataDefaults<- Man page
edgeDataDefaults<-,graph,character,ANY-method Man page
edgeDataDefaults<-,graph,character-method Man page
edgeDataDefaults<-,graph,missing,list-method Man page
edgeDataDefaults<-,graphBAM,character,ANY-method Man page
edgeDataDefaults<-,graphBAM,missing,list-method Man page
edgeDataDefaults<--methods Man page
edgeKiller Source code
edgeL Man page
edgeL,clusterGraph-method Man page
edgeL,distGraph-method Man page
edgeL,graph-method Man page
edgeL,graphNEL-method Man page
edgeMatrix Man page
edgeMatrix,clusterGraph-method Man page
edgeMatrix,distGraph-method Man page
edgeMatrix,graphAM-method Man page
edgeMatrix,graphBAM-method Man page
edgeMatrix,graphNEL-method Man page
edgeNames Man page
edgeNames,graph-method Man page
edgeRenderInfo Source code
edgeSetIntersect0 Source code
edgeSetToMatrix Source code
edgeSetUnion0 Source code
edgeWeights Man page
edgeWeights,clusterGraph,ANY-method Man page
edgeWeights,clusterGraph-method Man page
edgeWeights,distGraph,ANY-method Man page
edgeWeights,distGraph-method Man page
edgeWeights,graph,character-method Man page
edgeWeights,graph,missing-method Man page
edgeWeights,graph,numeric-method Man page
edgeWeights,graphBAM,character-method Man page
edgeWeights,graphBAM,missing-method Man page
edgeWeights,graphBAM,numeric-method Man page
edgeWeights,graphBAM-method Man page
edgeWeights,graphNEL-method Man page
edgemode Man page
edgemode,graph-method Man page
edgemode<- Man page
edgemode<-,graph,character-method Man page
edgemode<-,graphBAM,character-method Man page
edges Man page Man page
edges,clusterGraph,character-method Man page
edges,clusterGraph,missing-method Man page
edges,distGraph,character-method Man page
edges,distGraph,missing-method Man page
edges,graphAM,character-method Man page
edges,graphAM,missing-method Man page
edges,graphBAM,character-method Man page
edges,graphBAM,missing-method Man page
edges,graphNEL,character-method Man page
edges,graphNEL,missing-method Man page
esetsFemale Man page
esetsMale Man page
eweights Source code
extendAdjMat Source code
extractFromTo,graphBAM-method Man page
extractGraphAM Source code
extractGraphBAM Source code
file-class Man page
fromGXL Man page
fromGXL,connection-method Man page
fromGXL-methods Man page
ftM2adjM Source code
ftM2graphNEL Source code
ftM2int Source code
getBitCell Source code
getColumn Source code
getEdgeList Source code
getIndices Source code
getNodeIndex Source code
getObjectSlots Source code
getRow Source code
getWeightList2 Source code
graph-class Man page
graph.par Source code
graph.par.get Source code
graph2SparseM Man page Source code
graphAM-class Man page
graphBAM Man page Source code
graphBAM-class Man page
graphBase-class Man page
graphExamples Man page
graphIntersect Man page
graphIntersect,graphBAM,graphBAM-method Man page
graphNEL-class Man page
graphNEL_init_edgeL_weights Source code
graphNEL_init_edges Source code
graphNEL_init_edges_nested Source code
graphRenderInfo Source code
graphToBAM Source code
graphUnion Man page
graphUnion,graphBAM,graphBAM-method Man page
gxlTreeNEL Man page Source code
gzfile-class Man page
hasEdgemode Source code
inE Source code
inEdges Man page
inEdges,character,graphAM-method Man page
inEdges,character,graphBAM-method Man page
inEdges,character,graphNEL-method Man page
inEdges,graphAM,missing-method Man page
inEdges,graphNEL,missing-method Man page
inEdges,missing,graphAM-method Man page
inEdges,missing,graphNEL-method Man page
inOutCounts Source code
initEdgeSet Source code
initialize Man page
initialize,attrData-method Man page
initialize,distGraph-method Man page
initialize,graphAM-method Man page
initialize,graphBAM-method Man page
initialize,graphNEL-method Man page
int2ftM Source code
integrinMediatedCellAdhesion Man page
intersection Man page
intersection,graph,graph-method Man page
intersection2 Man page
intersection2,graph,graph-method Man page
isAdjacent Man page
isAdjacent,graph,character,character-method Man page
isAdjacent,graphAM,character,character-method Man page
isAdjacent,graphBAM,character,character-method Man page
isAdjacent-methods Man page
isConnected Man page
isConnected,graph-method Man page
isDirected Man page
isDirected,graph-method Man page
isDirected-methods Man page
isUpToDate Source code
isValidAdjMat Source code
isValidNodeList Source code
join Man page
join,graph,graph-method Man page
listEdges Source code
listLen Source code
makeMDEdgeSets Source code
makebits Source code
mostEdges Source code
names,attrData-method Man page
names<-,attrData,character-method Man page
nbitset Source code
nodeData,graph,character,character-method Man page
nodeData,graph,character,missing-method Man page
nodeData,graph,missing,character-method Man page
nodeData,graph,missing,missing-method Man page
nodeData,graphBAM,character,character-method Man page
nodeData,graphBAM,character,missing-method Man page
nodeData,graphBAM,missing,character-method Man page
nodeData,graphBAM,missing,missing-method Man page
nodeData<-,graph,character,character-method Man page
nodeData<-,graph,missing,character-method Man page
nodeData<-,graphBAM,character,character-method Man page
nodeData<-,graphBAM,missing,character-method Man page
nodeDataDefaults,graph,character-method Man page
nodeDataDefaults,graph,missing-method Man page
nodeDataDefaults,graphBAM,character-method Man page
nodeDataDefaults,graphBAM,missing-method Man page
nodeDataDefaults<-,graph,character,ANY-method Man page
nodeDataDefaults<-,graph,character-method Man page
nodeDataDefaults<-,graph,missing,list-method Man page
nodeDataDefaults<-,graphBAM,character,ANY-method Man page
nodeDataDefaults<-,graphBAM,missing,ANY-method Man page
nodeDataDefaults<-,graphBAM,missing,list-method Man page
nodeRenderInfo Source code
nodes Man page
nodes,clusterGraph-method Man page
nodes,distGraph-method Man page
nodes,graph-method Man page
nodes,graphAM-method Man page
nodes,graphBAM-method Man page
nodes,graphNEL-method Man page
nodes<- Man page
nodes<-,clusterGraph,character-method Man page
nodes<-,graph,character-method Man page
nodes<-,graphAM,character-method Man page
nodes<-,graphBAM,character-method Man page
nodes<-,graphNEL,character-method Man page
nullgraphID Man page
numEdges Man page
numEdges,graph-method Man page
numEdges,graphAM-method Man page
numEdges,graphBAM-method Man page
numNoEdges Source code
numNodes Man page
numNodes,clusterGraph-method Man page
numNodes,distGraph-method Man page
numNodes,graph-method Man page
numNodes,graphAM-method Man page
numNodes,graphBAM-method Man page
numNodes,graphNEL-method Man page
oneWeights Source code
parRenderInfo Source code
pathWeights Man page
pkgInstOrder Man page Source code
randFromTo Source code
randomEGraph Source code
randomGraph Source code
randomNodeGraph Source code
removeAttrDataItem<- Man page
removeAttrDataItem<-,attrData,character,NULL-method Man page
removeEdge,character,character,graphAM-method Man page
removeEdge,character,character,graphBAM-method Man page
removeEdge,character,character,graphNEL-method Man page
removeEdgesByWeight Man page
removeEdgesByWeight,graphBAM-method Man page
removeNode,character,graphAM-method Man page
removeNode,character,graphBAM-method Man page
removeNode,character,graphNEL-method Man page
reverseEdgeDirections Source code
setBitCell Source code
setRenderInfo Source code
setbit Source code
setbitv Source code
show Man page
show,clusterGraph-method Man page
show,distGraph-method Man page
show,graph-method Man page
show,graphBAM-method Man page
sparseM2Graph Man page Source code
subsetEdgeSets Source code
sumbits Source code
swapNames Source code
testbit Source code
threshold Man page
threshold,distGraph-method Man page
toGXL Man page
toGXL,graphNEL-method Man page
toGXL-methods Man page
ugraph,graphBAM-method Man page
ugraphOld Source code
union Man page
union,graph,graph-method Man page
updateFolder Source code
updateGraph Man page
updateGraph,graph-method Man page
url-class Man page
validGraph Source code
validateGXL Man page
validateGXL,connection-method Man page
write.tlp Source code
vgpprasad91/graph documentation built on May 20, 2019, 2:46 p.m.

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