graph: A package to handle graph data structures

acc-methods | Methods for Accessibility Lists |

addEdge | addEdge |

addNode | addNode |

adj-methods | Methods for finding the adjacency list for selected nodes. |

apoptosisGraph | KEGG apoptosis pathway graph |

attrData-class | Class "attrData" |

attrDataItem-methods | Get and set attributes values for items in an attrData object |

attrDefaults-methods | Get and set the default attributes of an attrData object |

aveNumEdges | Calculate the average number of edges in a graph |

biocRepos | A graph representing the Bioconductor package repository |

boundary | Returns the Boundary between a Graph and a SubGraph |

buildRepDepGraph | Functionality to manage repository dependency graphs |

calcProb | Calculate the hypergeometric probability of the subgraph's... |

calcSumProb | Calculate the probability that a subgraph has an unusual... |

clearNode | clearNode |

clusterGraph-class | Class "clusterGraph" |

clusteringCoefficient-methods | Clustering coefficient of a graph |

combineNodes | combineNodes |

DFS | Depth First Search |

distGraph-class | Class "distGraph" |

duplicatedEdges | duplicatedEdges |

edgeDataDefaults-methods | Get and set default attributes for the edges of a graph |

edgeData-methods | Get and set attributes for the edges of a graph object |

edgeMatrix | Compute an Edge Matrix or weight vector for a Graph |

edgeSets | MultiGraph edgeSet data |

edgeWeights | Retrieve the edge weights of a graph |

fromGXL-methods | Methods for GXL manipulations in package graph |

graph2SparseM | Coercion methods between graphs and sparse matrices |

graphAM-class | Class "graphAM" |

graphBAM-class | EXPERIMENTAL class "graphBAM" |

graph-class | Class "graph" |

graphExamples | A List Of Example Graphs |

graphNEL-class | Class "graphNEL" |

IMCA | KEGG Integrin Mediated Cell Adhesion graph |

inEdges | Generic Method inEdges |

internal | Variables used for internal purposes |

isAdjacent-methods | Determine if nodes share an edge in a graph |

isDirected-methods | Determine if a graph has directed or undirected edges |

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