acc-methods | Methods for Accessibility Lists |
addEdge | addEdge |
addNode | addNode |
adj-methods | Methods for finding the adjacency list for selected nodes. |
apoptosisGraph | KEGG apoptosis pathway graph |
attrData-class | Class "attrData" |
attrDataItem-methods | Get and set attributes values for items in an attrData object |
attrDefaults-methods | Get and set the default attributes of an attrData object |
aveNumEdges | Calculate the average number of edges in a graph |
biocRepos | A graph representing the Bioconductor package repository |
boundary | Returns the Boundary between a Graph and a SubGraph |
buildRepDepGraph | Functionality to manage repository dependency graphs |
calcProb | Calculate the hypergeometric probability of the subgraph's... |
calcSumProb | Calculate the probability that a subgraph has an unusual... |
clearNode | clearNode |
clusterGraph-class | Class "clusterGraph" |
clusteringCoefficient-methods | Clustering coefficient of a graph |
combineNodes | combineNodes |
DFS | Depth First Search |
distGraph-class | Class "distGraph" |
duplicatedEdges | duplicatedEdges |
edgeDataDefaults-methods | Get and set default attributes for the edges of a graph |
edgeData-methods | Get and set attributes for the edges of a graph object |
edgeMatrix | Compute an Edge Matrix or weight vector for a Graph |
edgeSets | MultiGraph edgeSet data |
edgeWeights | Retrieve the edge weights of a graph |
fromGXL-methods | Methods for GXL manipulations in package graph |
graph2SparseM | Coercion methods between graphs and sparse matrices |
graphAM-class | Class "graphAM" |
graphBAM-class | EXPERIMENTAL class "graphBAM" |
graph-class | Class "graph" |
graphExamples | A List Of Example Graphs |
graphNEL-class | Class "graphNEL" |
IMCA | KEGG Integrin Mediated Cell Adhesion graph |
inEdges | Generic Method inEdges |
internal | Variables used for internal purposes |
isAdjacent-methods | Determine if nodes share an edge in a graph |
isDirected-methods | Determine if a graph has directed or undirected edges |
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