filtered_contig_annotations: A 10x genomics TCR sequencing dataset.
In victoraLab/clonality: Easily Define Groups Of T/B Cells
filtered_contig_annotations R Documentation
A 10x genomics TCR sequencing dataset.
Description
A dataset containing TCR Alpha and Beta sequences from 10x genomics-generated single cells.
Usage
filtered_contig_annotations
Format
A data frame with 49 rows and 9 variables:
- barcode
Unique barcode sequences to indentify single cells
- contig_id
Unique ID for contig assemble per single cell
- length
chain length in bp
- chain
The TCR chain name
- v_gene
The V-gene name
- d_gene
The D-gene name
- j_gene
The J-gene name
- c_gene
The constant gene name
- productive
If the TCR sequence is productive
- cdr3
The amino acid sequence of the CDR3
- cdr3_nt
The nucleotide sequence of the CDR3
- reads
The read sequence number for each barcode
- umis
The number of umis for each cell
- raw_clonotype_id
The clonotype id designated to each cell by the 10x genomics protocol
...
victoraLab/clonality documentation built on March 19, 2024, 7:41 p.m.
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| filtered_contig_annotations | R Documentation |
A 10x genomics TCR sequencing dataset.
Description
A dataset containing TCR Alpha and Beta sequences from 10x genomics-generated single cells.
Usage
filtered_contig_annotations
Format
A data frame with 49 rows and 9 variables:
- barcode
Unique barcode sequences to indentify single cells
- contig_id
Unique ID for contig assemble per single cell
- length
chain length in bp
- chain
The TCR chain name
- v_gene
The V-gene name
- d_gene
The D-gene name
- j_gene
The J-gene name
- c_gene
The constant gene name
- productive
If the TCR sequence is productive
- cdr3
The amino acid sequence of the CDR3
- cdr3_nt
The nucleotide sequence of the CDR3
- reads
The read sequence number for each barcode
- umis
The number of umis for each cell
- raw_clonotype_id
The clonotype id designated to each cell by the 10x genomics protocol
...
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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