gen_immunarch: Generates an immunarch compatible input

In victoraLab/clonality: Easily Define Groups Of T/B Cells

Generates an immunarch compatible input

Description

Returns a dataset compatible with the immunarch package.

Usage

gen_immunarch(
  seu = seu,
  proportion = "rm.na",
  sample_column = NULL,
  metadata_columns = NULL
)

Arguments

seu	Seurat with clonality generated columns.
proportion	Character. Possible values: all against all cells, rm.na remove NAs prior to proportion.
sample_column	Character. Column to be used as sample to cut the data.
metadata_columns	Character. Columns to split the data.

Examples

gen_immunarch(seu, proportion = "rm.na",  sample_column = "Conditions")

victoraLab/clonality documentation built on March 19, 2024, 7:41 p.m.