Description Usage Arguments Value See Also Examples
Sets up and stores all relevant information required for spatio-temporal analyses of passive telemetry data from IMOS and VEMCO databases. This function produces an 'ATT' object which standardises field names (currently handles IMOS ATF export data structure).
1 2 |
Tag.Detections |
data frame with tag detection data including coordinates. Currently only handles IMOS ATF data structure. |
Tag.Metadata |
data frame with metadata for all tags represented in Tag.Detections. Currently only handles IMOS ATF metadata structure. |
Station.Information |
data frame with information on receiver station including coordinates. Currently only handles IMOS ATF station information structure. |
source |
source character indicating source of Tag.Detection data. "IMOS" for data downloaded from IMOS data repository and "VEMCO" for data exported from the VEMCO VUE database |
tz |
time zone of date time information in Tag.Detections, Tag.Metadata and Station.Information. If none provided defaults to "UTC" |
crs |
geographic coordinate system for all Tag.Detections, Tag.Metadata and Station.Information (latitude/longitude). If none provided defaults to WGS84. |
Produces an 'ATT' object that is a list of tibbles containing Tag.Detections, Tag.Metadata and Station.Information. The 'ATT' object will have a geographic coordinate system associated with it for smoother functioning of subsequent functions.
setup data can be used to estimate detection detectionSummary
, dispersal dispersalSummary
and Short-term center of activity COA
.
1 2 3 4 5 6 7 8 9 10 11 12 13 | ## Import example datasets
data(IMOSdata)
data(VEMCOdata)
data(taginfo)
data(statinfo)
## Setup data from IMOS ATF data repository
ATTdata<- setupData(Tag.Detections = IMOSdata, Tag.Metadata = taginfo, Station.Information = statinfo, source = "IMOS")
ATTdata
## Setup data from VEMCO VUE database
ATTdata<- setupData(Tag.Detections = VEMCOdata, Tag.Metadata = taginfo, Station.Information = statinfo, source = "VEMCO")
ATTdata
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