Man pages for vincela/VarExp
Computes phenotypic variance explained by a set of genetic and/or interaction effects
| calculateContParams | Calculate the mean and variance of a quantitative variable in... |
| calculateExpoParams | Calculate the mean and the variance of the exposure |
| calculateVarFrac | Calculate the fraction of phenotypic variance explained by as... |
| calculateVarFrac_v2 | Calculate the fraction of phenotypic variance explained by as... |
| changeCoding | Change the coding of the variant if the reference allele... |
| COHORT | Example of cohort description input file |
| getAdditivelyCodedMatrix | Code additively the genotypes Sum the two columns per... |
| getGenoCorMatrix | Compute the genotype correlation matrix. |
| getMatCorSVD | Perform singular Value Decomposition on the correlation... |
| get_vcf | This function is from the 'proxysnps' package available at... |
| GWAS | Example of GWAS result input file |
| ind | This is data included in the package |
| preparePhenoTable | Check that the table contains the mandatory columns and keep... |
| prepareResultTable | Check that the table contains the mandatory columns and keep... |
| standardizeBeta | Derive betas in the standardized model from betas in the... |
